PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do024794.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Dof
Protein Properties Length: 317aa    MW: 33305.1 Da    PI: 9.1861
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do024794.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof127.34.6e-403190261
      zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                +++al+cprCdstntkfCyynnysl+qPryfCkaCrryWtkGG+lrnvPvGgg+rknk++
  Do024794.1 31 QDQALNCPRCDSTNTKFCYYNNYSLTQPRYFCKACRRYWTKGGTLRNVPVGGGSRKNKQQ 90
                7899******************************************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-272989IPR003851Zinc finger, Dof-type
PfamPF027013.5E-343289IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1063589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEVAAAAARN VKAKQAWQQQ AGGERKPRPQ QDQALNCPRC DSTNTKFCYY NNYSLTQPRY  60
FCKACRRYWT KGGTLRNVPV GGGSRKNKQQ RASAASSAPP TSSSSPSGSK KVNNITQQLM  120
MMPTASAMTT TADFSNVLPA FMSTGAGFEL PTSDHHQVSL PFVPLSLSSD PDGGSGAAPL  180
FMDMLRGGFL DSNGLALPFP PLSFGAMPIH GHGSTDQHAT QLVGPLQGVE EVKPMAAAAG  240
GGLQWLSPQH GSINHGGFAA GSAGGVVQKQ EEEVVGDGGR SSSNKNHNNV GGASGGSGRA  300
SEYYDWQRDL INSSSLI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3763882e-53AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18.
GenBankAM0843602e-53AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004980592.11e-90PREDICTED: dof zinc finger protein PBF-like
SwissprotO244632e-60PBF_MAIZE; Dof zinc finger protein PBF
TrEMBLK3YXY91e-90K3YXY9_SETIT; Uncharacterized protein
STRINGSi019139m4e-90(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.11e-39Dof family protein